MVTest - GWAS Analysis

• Installation
  • Install with PIP
  • Manual Installation
  • System Requirements
  • Running Unit Tests
  • Virtual Env
  • Miniconda
• What is MVtest?
  • Documentation
  • Command-Line Arguments
    • Getting help
    • Input Data
      • Pedigree Data
      • PLINK Binary Pedigree
      • Transposed Pedigree Data
      • Pedigree/Transposed Pedigree Common Flags
      • IMPUTE output
      • IMPUTE File Input
      • MACH output
      • MACH File Input
      • Phenotype/Covariate Data
    • Restricting regions for analysis
• mvmany Helper script
  • The Default Template
    • Example Template (SLURM)
    • Example TORQUE Template
  • Command Line Arguments
• MVtest API Libraries
• Development Notes
  • MVtest authors
  • Change Log