MVtest API Libraries

The following represents the API functionality associated with the meanvar application which includes a single interface for extracting data from each of the supported file types (pygwas). The contents below are only of interest for those who wish to extend MVtest or utilize PyGWAS in their own GWAS analysis programs.

MVtest is released under the Gnu Public license version 3 (http://www.gnu.org/licenses/gpl-3.0.en.html).

• meanvar package
  • meanvar.mv_esteq module
  • meanvar.mvresult module
  • meanvar.mvstandardizer module
  • meanvar.simple_timer module
  • Module contents
• pygwas package
  • pygwas.bed_parser module
  • pygwas.boundary module
  • pygwas.data_parser module
  • pygwas.exceptions module
  • pygwas.impute_parser module
  • pygwas.locus module
  • pygwas.mach_parser module
  • pygwas.parsed_locus module
  • pygwas.pedigree_parser module
  • pygwas.pheno_covar module
  • pygwas.snp_boundary_check module
  • pygwas.standardizer module
  • pygwas.transposed_pedigree_parser module
  • Module contents